PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_1AL_323AE5FA3.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NF-YC
Protein Properties Length: 135aa    MW: 13885.7 Da    PI: 9.2321
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_1AL_323AE5FA3.4genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC87.91e-27211091897
                  NF-YC  18 nhelPlarikkilkade.d........vkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdiv 96 
                             h+lPlarikki+k    d         +mis eaPv++s+acelf+ elt  +w  + e +rrt++  d+aaav  td fdflvd+v
  Traes_1AL_323AE5FA3.4  21 PHALPLARIKKIMKRSAgDgsggygagARMISGEAPVVFSRACELFVAELTQAAWAATLEGRRRTVHAEDVAAAVRDTDLFDFLVDVV 108
                            599***********753212222333389*********************************************************98 PP

                  NF-YC  97 p 97 
                             
  Traes_1AL_323AE5FA3.4 109 K 109
                            5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.109.3E-291896IPR009072Histone-fold
SuperFamilySSF471133.02E-2218104IPR009072Histone-fold
PfamPF008081.4E-152495IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MRISRPYSGV SRSGATARTG PHALPLARIK KIMKRSAGDG SGGYGAGARM ISGEAPVVFS  60
RACELFVAEL TQAAWAATLE GRRRTVHAED VAAAVRDTDL FDFLVDVVKP RPGDDGVGDG  120
VGLAPAAGVH GGALD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C7e-232211140119HapE
4g92_C7e-232211140119HapE
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7323451e-83AL732345.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F12, complete sequence.
GenBankCP0126121e-83CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653894.11e-55PREDICTED: nuclear transcription factor Y subunit C-2-like
SwissprotQ9ZVL32e-29NFYC3_ARATH; Nuclear transcription factor Y subunit C-3
TrEMBLW4ZRM32e-91W4ZRM3_WHEAT; Uncharacterized protein
STRINGMLOC_65598.15e-65(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116583339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.34e-21nuclear factor Y, subunit C3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]